IL_5DGE_409

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GUUU*AUC

Length

7 nucleotides

Bulged bases

5DGE|1|6|U|820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGE_409 not in the Motif Atlas

Homologous match to IL_4V88_426

Geometric discrepancy: 0.1179

The information below is about IL_4V88_426

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5DGE|1|6|G|819
5DGE|1|6|U|820
5DGE|1|6|U|821
5DGE|1|6|U|822
*
5DGE|1|6|A|850
5DGE|1|6|U|851
5DGE|1|6|C|852

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain m9

60S ribosomal protein L19-A