IL_5DGE_473

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GCC*GUUGU

Length

8 nucleotides

Bulged bases

5DGE|1|1|U|3354, 5DGE|1|1|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGE_473 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.2659

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5DGE|1|1|G|3348
5DGE|1|1|C|3349
5DGE|1|1|C|3350
*
5DGE|1|1|G|3353
5DGE|1|1|U|3354
5DGE|1|1|U|3355
5DGE|1|1|G|3356
5DGE|1|1|U|3357

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain N2

60S ribosomal protein L22-A

Chain S8

40S ribosomal protein S8-A