IL_5DGE_487

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

AUUCUUC*GGAAUAGU

Length

15 nucleotides

Bulged bases

5DGE|1|5|U|1629, 5DGE|1|5|U|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGE|1|5|A|1625
5DGE|1|5|U|1626
5DGE|1|5|U|1627
5DGE|1|5|C|1628
5DGE|1|5|U|1629
5DGE|1|5|U|1630
5DGE|1|5|C|1631
*
5DGE|1|5|G|1811
5DGE|1|5|G|1812
5DGE|1|5|A|1813
5DGE|1|5|A|1814
5DGE|1|5|U|1815
5DGE|1|5|A|1816
5DGE|1|5|G|1817
5DGE|1|5|U|1818

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain n7

60S ribosomal protein L27-A