IL_5DGF_141

3D structure

PDB id

5DGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUAUAAG*UGAAAC

Length

13 nucleotides

Bulged bases

5DGF|1|2|U|66, 5DGF|1|2|A|68

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGF|1|2|G|63
5DGF|1|2|U|64
5DGF|1|2|A|65
5DGF|1|2|U|66
5DGF|1|2|A|67
5DGF|1|2|A|68
5DGF|1|2|G|69
*
5DGF|1|2|U|82
5DGF|1|2|G|83
5DGF|1|2|A|84
5DGF|1|2|A|85
5DGF|1|2|A|86
5DGF|1|2|C|87

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain N4

60S ribosomal protein L24-A

Chain S6

40S ribosomal protein S6-A