IL_5DGF_170

3D structure

PDB id

5DGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAAAAAUUA*UAUAUUAGC

Length

19 nucleotides

Bulged bases

5DGF|1|2|U|794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGF|1|2|G|751
5DGF|1|2|A|752
5DGF|1|2|A|753
5DGF|1|2|A|754
5DGF|1|2|A|755
5DGF|1|2|A|756
5DGF|1|2|A|757
5DGF|1|2|U|758
5DGF|1|2|U|759
5DGF|1|2|A|760
*
5DGF|1|2|U|790
5DGF|1|2|A|791
5DGF|1|2|U|792
5DGF|1|2|A|793
5DGF|1|2|U|794
5DGF|1|2|U|795
5DGF|1|2|A|796
5DGF|1|2|G|797
5DGF|1|2|C|798

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain D2

40S ribosomal protein S22-A

Chain S4

40S ribosomal protein S4-A

Chain S9

40S ribosomal protein S9-A