IL_5DGF_204
3D structure
- PDB id
- 5DGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AGCCAGCGA*UUGUGAAACU
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DGF_204 not in the Motif Atlas
- Homologous match to IL_8C3A_466
- Geometric discrepancy: 0.4986
- The information below is about IL_8C3A_466
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48143.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5DGF|1|2|A|1479
5DGF|1|2|G|1480
5DGF|1|2|C|1481
5DGF|1|2|C|1482
5DGF|1|2|A|1483
5DGF|1|2|G|1484
5DGF|1|2|C|1485
5DGF|1|2|G|1486
5DGF|1|2|A|1487
*
5DGF|1|2|U|1519
5DGF|1|2|U|1520
5DGF|1|2|G|1521
5DGF|1|2|U|1522
5DGF|1|2|G|1523
5DGF|1|2|A|1524
5DGF|1|2|A|1525
5DGF|1|2|A|1526
5DGF|1|2|C|1527
5DGF|1|2|U|1528
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C6
- 40S ribosomal protein S16-A
- Chain C9
- 40S ribosomal protein S19-A
- Chain D0
- 40S ribosomal protein S20
- Chain D5
- 40S ribosomal protein S25-A
- Chain D9
- 40S ribosomal protein S29-A
- Chain S3
- 40S ribosomal protein S3
- Chain S5
- 40S ribosomal protein S5
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