IL_5DGF_227
3D structure
- PDB id
- 5DGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UAGUG*CAUA
- Length
- 9 nucleotides
- Bulged bases
- 5DGF|1|3|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DGF_227 not in the Motif Atlas
- Geometric match to IL_6CZR_168
- Geometric discrepancy: 0.2296
- The information below is about IL_6CZR_168
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67743.1
- Basepair signature
- cWW-cWW-cWH-cWW
- Number of instances in this motif group
- 9
Unit IDs
5DGF|1|3|U|83
5DGF|1|3|A|84
5DGF|1|3|G|85
5DGF|1|3|U|86
5DGF|1|3|G|87
*
5DGF|1|3|C|94
5DGF|1|3|A|95
5DGF|1|3|U|96
5DGF|1|3|A|97
Current chains
- Chain 3
- 5S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain L7
- 60S ribosomal protein L7-A
- Chain M0
- 60S ribosomal protein L10
- Chain N0
- 60S ribosomal protein L20-A
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