IL_5DGF_234
3D structure
- PDB id
- 5DGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 5DGF|1|5|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DGF_234 not in the Motif Atlas
- Homologous match to IL_5TBW_005
- Geometric discrepancy: 0.0547
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5DGF|1|5|C|31
5DGF|1|5|U|32
5DGF|1|5|G|33
5DGF|1|5|A|34
5DGF|1|5|A|35
5DGF|1|5|C|36
5DGF|1|5|U|37
5DGF|1|5|U|38
*
5DGF|1|5|A|45
5DGF|1|5|U|46
5DGF|1|5|C|47
5DGF|1|5|A|48
5DGF|1|5|A|49
5DGF|1|5|U|50
5DGF|1|5|A|51
5DGF|1|5|A|52
5DGF|1|5|G|53
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain m3
- 60S ribosomal protein L13-A
- Chain m5
- 60S ribosomal protein L15-A
- Chain n8
- 60S ribosomal protein L28
- Chain o7
- 60S ribosomal protein L37-A
- Chain q2
- 60S ribosomal protein L42-A
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