IL_5DGF_249
3D structure
- PDB id
- 5DGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAUAAAUC*GGAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5DGF|1|5|A|519, 5DGF|1|5|U|520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DGF_249 not in the Motif Atlas
- Homologous match to IL_5TBW_019
- Geometric discrepancy: 0.0895
- The information below is about IL_5TBW_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74024.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
5DGF|1|5|G|517
5DGF|1|5|G|518
5DGF|1|5|A|519
5DGF|1|5|U|520
5DGF|1|5|A|521
5DGF|1|5|A|522
5DGF|1|5|A|523
5DGF|1|5|U|524
5DGF|1|5|C|525
*
5DGF|1|5|G|567
5DGF|1|5|G|568
5DGF|1|5|A|569
5DGF|1|5|A|570
5DGF|1|5|U|571
5DGF|1|5|A|572
5DGF|1|5|C|573
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l4
- 60S ribosomal protein L4-A
- Chain l7
- 60S ribosomal protein L7-A
- Chain m4
- 60S ribosomal protein L14-A
- Chain n0
- 60S ribosomal protein L20-A
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