IL_5DGF_274
3D structure
- PDB id
- 5DGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUCCG*UGA
- Length
- 8 nucleotides
- Bulged bases
- 5DGF|1|5|C|1016, 5DGF|1|5|C|1017
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DGF_274 not in the Motif Atlas
- Geometric match to IL_5ML7_010
- Geometric discrepancy: 0.3628
- The information below is about IL_5ML7_010
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_68118.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 29
Unit IDs
5DGF|1|5|U|1014
5DGF|1|5|U|1015
5DGF|1|5|C|1016
5DGF|1|5|C|1017
5DGF|1|5|G|1018
*
5DGF|1|5|U|1034
5DGF|1|5|G|1035
5DGF|1|5|A|1036
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l5
- 60S ribosomal protein L5
- Chain m0
- 60S ribosomal protein L10
- Chain m1
- 60S ribosomal protein L11-B
- Chain sM
- Suppressor protein STM1
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