IL_5DGF_386
3D structure
- PDB id
- 5DGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUUCGAU*AUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DGF_386 not in the Motif Atlas
- Geometric match to IL_6CZR_124
- Geometric discrepancy: 0.3209
- The information below is about IL_6CZR_124
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38684.1
- Basepair signature
- cWW-L-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5DGF|1|6|U|318
5DGF|1|6|U|319
5DGF|1|6|U|320
5DGF|1|6|C|321
5DGF|1|6|G|322
5DGF|1|6|A|323
5DGF|1|6|U|324
*
5DGF|1|6|A|344
5DGF|1|6|U|345
5DGF|1|6|G|346
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain c1
- 40S ribosomal protein S11-A
- Chain s8
- 40S ribosomal protein S8-A
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