IL_5DGF_467
3D structure
- PDB id
- 5DGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGGCCUGAUUUUAUGCAGGCCACCAU
- Length
- 40 nucleotides
- Bulged bases
- 5DGF|1|1|C|1556, 5DGF|1|1|A|1558, 5DGF|1|1|C|1581, 5DGF|1|1|C|1582
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5DGF|1|1|A|1537
5DGF|1|1|G|1538
5DGF|1|1|A|1539
5DGF|1|1|U|1540
5DGF|1|1|G|1541
5DGF|1|1|G|1542
*
5DGF|1|1|C|1551
5DGF|1|1|G|1552
5DGF|1|1|U|1553
5DGF|1|1|U|1554
5DGF|1|1|U|1555
5DGF|1|1|C|1556
5DGF|1|1|A|1557
5DGF|1|1|A|1558
5DGF|1|1|A|1559
5DGF|1|1|G|1560
5DGF|1|1|G|1561
5DGF|1|1|C|1562
5DGF|1|1|C|1563
5DGF|1|1|U|1564
5DGF|1|1|G|1565
5DGF|1|1|A|1566
5DGF|1|1|U|1567
5DGF|1|1|U|1568
5DGF|1|1|U|1569
5DGF|1|1|U|1570
5DGF|1|1|A|1571
5DGF|1|1|U|1572
5DGF|1|1|G|1573
5DGF|1|1|C|1574
5DGF|1|1|A|1575
5DGF|1|1|G|1576
5DGF|1|1|G|1577
5DGF|1|1|C|1578
5DGF|1|1|C|1579
5DGF|1|1|A|1580
5DGF|1|1|C|1581
5DGF|1|1|C|1582
5DGF|1|1|A|1583
5DGF|1|1|U|1584
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L2
- 60S ribosomal protein L2-A
- Chain L8
- 60S ribosomal protein L8-A
- Chain M5
- 60S ribosomal protein L15-A
- Chain N5
- 60S ribosomal protein L25
- Chain O7
- 60S ribosomal protein L37-A
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