IL_5DGF_474

3D structure

PDB id

5DGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UAUAAG*UGAAA

Length

11 nucleotides

Bulged bases

5DGF|1|2|U|66, 5DGF|1|2|A|68

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGF_474 not in the Motif Atlas

Homologous match to IL_8P9A_379

Geometric discrepancy: 0.2

The information below is about IL_8P9A_379

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_21667.2

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

5DGF|1|2|U|64
5DGF|1|2|A|65
5DGF|1|2|U|66
5DGF|1|2|A|67
5DGF|1|2|A|68
5DGF|1|2|G|69
*
5DGF|1|2|U|82
5DGF|1|2|G|83
5DGF|1|2|A|84
5DGF|1|2|A|85
5DGF|1|2|A|86

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain N4

60S ribosomal protein L24-A

Chain S6

40S ribosomal protein S6-A