IL_5DGF_482
3D structure
- PDB id
- 5DGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CAAUAAGGAUUG*CUUGAUUUUG
- Length
- 22 nucleotides
- Bulged bases
- 5DGF|1|2|G|1228
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DGF_482 not in the Motif Atlas
- Homologous match to IL_8P9A_435
- Geometric discrepancy: 0.2375
- The information below is about IL_8P9A_435
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5DGF|1|2|C|1222
5DGF|1|2|A|1223
5DGF|1|2|A|1224
5DGF|1|2|U|1225
5DGF|1|2|A|1226
5DGF|1|2|A|1227
5DGF|1|2|G|1228
5DGF|1|2|G|1229
5DGF|1|2|A|1230
5DGF|1|2|U|1231
5DGF|1|2|U|1232
5DGF|1|2|G|1233
*
5DGF|1|2|C|1252
5DGF|1|2|U|1253
5DGF|1|2|U|1254
5DGF|1|2|G|1255
5DGF|1|2|A|1256
5DGF|1|2|U|1257
5DGF|1|2|U|1258
5DGF|1|2|U|1259
5DGF|1|2|U|1260
5DGF|1|2|G|1261
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C0
- 40S ribosomal protein S10-A
- Chain C2
- 40S ribosomal protein S12
- Chain D9
- 40S ribosomal protein S29-A
- Chain E1
- Ubiquitin-40S ribosomal protein S31
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