IL_5DGF_487
3D structure
- PDB id
- 5DGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAC*GUU
- Length
- 7 nucleotides
- Bulged bases
- 5DGF|1|5|A|338
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DGF_487 not in the Motif Atlas
- Geometric match to IL_7ECO_005
- Geometric discrepancy: 0.2678
- The information below is about IL_7ECO_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.4
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 215
Unit IDs
5DGF|1|5|A|336
5DGF|1|5|G|337
5DGF|1|5|A|338
5DGF|1|5|C|339
*
5DGF|1|8|G|25
5DGF|1|8|U|26
5DGF|1|8|U|27
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain l4
- 60S ribosomal protein L4-A
- Chain m3
- 60S ribosomal protein L13-A
- Chain n6
- 60S ribosomal protein L26-A
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