IL_5DGF_503

3D structure

PDB id

5DGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

5DGF|1|6|A|1631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGF_503 not in the Motif Atlas

Geometric match to IL_5E81_401

Geometric discrepancy: 0.2934

The information below is about IL_5E81_401

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

5DGF|1|6|G|1146
5DGF|1|6|A|1147
5DGF|1|6|C|1148
*
5DGF|1|6|G|1629
5DGF|1|6|U|1630
5DGF|1|6|A|1631
5DGF|1|6|C|1632

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d6

40S ribosomal protein S26-B

Chain s2

40S ribosomal protein S2