IL_5DGV_121

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CACAC*GCGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGV_121 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3231

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

5DGV|1|1|C|3162
5DGV|1|1|A|3163
5DGV|1|1|C|3164
5DGV|1|1|A|3165
5DGV|1|1|C|3166
*
5DGV|1|1|G|3284
5DGV|1|1|C|3285
5DGV|1|1|G|3286
5DGV|1|1|U|3287
5DGV|1|1|G|3288

Current chains

Chain 1

25S ribosomal RNA

Nearby chains