IL_5DGV_122

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUAU*AUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGV_122 not in the Motif Atlas

Geometric match to IL_5C5W_003

Geometric discrepancy: 0.2804

The information below is about IL_5C5W_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

52

Unit IDs

5DGV|1|1|A|3168
5DGV|1|1|U|3169
5DGV|1|1|A|3170
5DGV|1|1|U|3171
*
5DGV|1|1|A|3279
5DGV|1|1|U|3280
5DGV|1|1|U|3281
5DGV|1|1|U|3282

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain O3

60S ribosomal protein L33-A