IL_5DGV_163

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UACA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGV_163 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.2666

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5DGV|1|2|U|517
5DGV|1|2|A|518
5DGV|1|2|C|519
5DGV|1|2|A|520
*
5DGV|1|2|U|532
5DGV|1|2|U|533
5DGV|1|2|A|534
5DGV|1|2|A|535

Current chains

Chain 2

Saccharomyces cerevisiae S288c RDN37-1 miscRNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain S9

40S ribosomal protein S9-A