IL_5DGV_172
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UAC*GAAUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DGV_172 not in the Motif Atlas
- Geometric match to IL_8VTW_093
- Geometric discrepancy: 0.3754
- The information below is about IL_8VTW_093
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_63959.1
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
5DGV|1|2|U|745
5DGV|1|2|A|746
5DGV|1|2|C|747
*
5DGV|1|2|G|802
5DGV|1|2|A|803
5DGV|1|2|A|804
5DGV|1|2|U|805
5DGV|1|2|A|806
Current chains
- Chain 2
- Saccharomyces cerevisiae S288c RDN37-1 miscRNA
Nearby chains
- Chain C1
- 40S ribosomal protein S11-A
- Chain D2
- 40S ribosomal protein S22-A
- Chain D3
- 40S ribosomal protein S23-A
- Chain S7
- 40S ribosomal protein S7-A
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