IL_5DGV_174

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAAAAAUUA*UAUAUUAGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGV|1|2|G|751
5DGV|1|2|A|752
5DGV|1|2|A|753
5DGV|1|2|A|754
5DGV|1|2|A|755
5DGV|1|2|A|756
5DGV|1|2|A|757
5DGV|1|2|U|758
5DGV|1|2|U|759
5DGV|1|2|A|760
*
5DGV|1|2|U|790
5DGV|1|2|A|791
5DGV|1|2|U|792
5DGV|1|2|A|793
5DGV|1|2|U|794
5DGV|1|2|U|795
5DGV|1|2|A|796
5DGV|1|2|G|797
5DGV|1|2|C|798

Current chains

Chain 2

Saccharomyces cerevisiae S288c RDN37-1 miscRNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain D2

40S ribosomal protein S22-A

Chain S4

40S ribosomal protein S4-A

Chain S9

40S ribosomal protein S9-A