IL_5DGV_177

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

5DGV|1|2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGV_177 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1103

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5DGV|1|2|G|867
5DGV|1|2|G|868
5DGV|1|2|A|869
5DGV|1|2|C|870
*
5DGV|1|2|G|957
5DGV|1|2|U|958
5DGV|1|2|U|959
5DGV|1|2|U|960
5DGV|1|2|U|961

Current chains

Chain 2

Saccharomyces cerevisiae S288c RDN37-1 miscRNA

Nearby chains

Chain C3

40S ribosomal protein S13

Chain D7

40S ribosomal protein S27-A