IL_5DGV_244

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGGG*UCUUUGUA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGV|1|5|U|169
5DGV|1|5|G|170
5DGV|1|5|G|171
5DGV|1|5|G|172
*
5DGV|1|5|U|246
5DGV|1|5|C|247
5DGV|1|5|U|248
5DGV|1|5|U|249
5DGV|1|5|U|250
5DGV|1|5|G|251
5DGV|1|5|U|252
5DGV|1|5|A|253

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain M3

60S ribosomal protein L13-A

Chain l8

60S ribosomal protein L8-A (eL8)

Chain m3

60S ribosomal protein L13-A

Chain o5

60S ribosomal protein L35-A