IL_5DGV_245
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UU*AGUG
- Length
- 6 nucleotides
- Bulged bases
- 5DGV|1|5|U|240
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DGV_245 not in the Motif Atlas
- Geometric match to IL_5TBW_501
- Geometric discrepancy: 0.2261
- The information below is about IL_5TBW_501
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_95601.6
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 9
Unit IDs
5DGV|1|5|U|177
5DGV|1|5|U|178
*
5DGV|1|5|A|238
5DGV|1|5|G|239
5DGV|1|5|U|240
5DGV|1|5|G|241
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain m3
- 60S ribosomal protein L13-A
- Chain o5
- 60S ribosomal protein L35-A
- Chain o7
- 60S ribosomal protein L37-A
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