IL_5DGV_251
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AGACAUGGCUGGG*CAUAAU
- Length
- 19 nucleotides
- Bulged bases
- 5DGV|1|5|U|620
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5DGV|1|5|A|436
5DGV|1|5|G|437
5DGV|1|5|A|438
5DGV|1|5|C|439
5DGV|1|5|A|440
5DGV|1|5|U|441
5DGV|1|5|G|442
5DGV|1|5|G|443
5DGV|1|5|C|491
5DGV|1|5|U|492
5DGV|1|5|G|493
5DGV|1|5|G|494
5DGV|1|5|G|495
*
5DGV|1|5|C|618
5DGV|1|5|A|619
5DGV|1|5|U|620
5DGV|1|5|A|621
5DGV|1|5|A|622
5DGV|1|5|U|623
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l6
- 60S ribosomal protein L6-A
- Chain o2
- 60S ribosomal protein L32
- Chain o3
- 60S ribosomal protein L33-A
Coloring options: