IL_5DGV_289

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

5DGV|1|5|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGV_289 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.3431

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5DGV|1|5|G|1234
5DGV|1|5|U|1235
5DGV|1|5|G|1236
5DGV|1|5|G|1237
5DGV|1|5|C|1238
*
5DGV|1|5|G|1250
5DGV|1|5|A|1251
5DGV|1|5|A|1252
5DGV|1|5|U|1253
5DGV|1|5|C|1254

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m2

60S ribosomal protein L12-A (uL11)

Chain p0

60S acidic ribosomal protein P0