IL_5DGV_339

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGV_339 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.0876

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5DGV|1|5|U|2835
5DGV|1|5|C|2836
5DGV|1|5|A|2837
5DGV|1|5|A|2838
5DGV|1|5|G|2839
*
5DGV|1|5|C|2849
5DGV|1|5|G|2850
5DGV|1|5|A|2851
5DGV|1|5|C|2852
5DGV|1|5|A|2853

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m0

60S ribosomal protein L10

Chain q0

Ubiquitin-60S ribosomal protein L40