IL_5DGV_358
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAACG*UUG
- Length
- 8 nucleotides
- Bulged bases
- 5DGV|1|5|U|3259
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DGV_358 not in the Motif Atlas
- Homologous match to IL_8C3A_133
- Geometric discrepancy: 0.2126
- The information below is about IL_8C3A_133
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60154.1
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
5DGV|1|5|C|3225
5DGV|1|5|A|3226
5DGV|1|5|A|3227
5DGV|1|5|C|3228
5DGV|1|5|G|3229
*
5DGV|1|5|U|3258
5DGV|1|5|U|3259
5DGV|1|5|G|3260
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l6
- 60S ribosomal protein L6-A
- Chain m4
- 60S ribosomal protein L14-A
- Chain m6
- 60S ribosomal protein L16-A
- Chain o3
- 60S ribosomal protein L33-A
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