IL_5DGV_374
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UCUAAG*CUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DGV_374 not in the Motif Atlas
- Homologous match to IL_4V88_389
- Geometric discrepancy: 0.0805
- The information below is about IL_4V88_389
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61299.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
5DGV|1|6|U|58
5DGV|1|6|C|59
5DGV|1|6|U|60
5DGV|1|6|A|61
5DGV|1|6|A|62
5DGV|1|6|G|63
*
5DGV|1|6|C|87
5DGV|1|6|U|88
5DGV|1|6|G|89
Current chains
- Chain 6
- Saccharomyces cerevisiae S288c RDN37-1 miscRNA
Nearby chains
- Chain d4
- 40S ribosomal protein S24-A
- Chain s4
- 40S ribosomal protein S4-A
- Chain s6
- 40S ribosomal protein S6-A
Coloring options: