IL_5DGV_439
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUG*UUAUC
- Length
- 8 nucleotides
- Bulged bases
- 5DGV|1|6|U|1370, 5DGV|1|6|A|1371
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DGV_439 not in the Motif Atlas
- Homologous match to IL_4V88_457
- Geometric discrepancy: 0.1467
- The information below is about IL_4V88_457
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
5DGV|1|6|G|1352
5DGV|1|6|U|1353
5DGV|1|6|G|1354
*
5DGV|1|6|U|1369
5DGV|1|6|U|1370
5DGV|1|6|A|1371
5DGV|1|6|U|1372
5DGV|1|6|C|1373
Current chains
- Chain 6
- Saccharomyces cerevisiae S288c RDN37-1 miscRNA
Nearby chains
- Chain c6
- 40S ribosomal protein S16-A
- Chain c9
- 40S ribosomal protein S19-A
Coloring options: