IL_5DGV_472

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCGG*CGA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGV_472 not in the Motif Atlas

Geometric match to IL_4V87_185

Geometric discrepancy: 0.3987

The information below is about IL_4V87_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09990.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

5DGV|1|1|U|1950
5DGV|1|1|C|1951
5DGV|1|1|G|1952
5DGV|1|1|G|1953
*
5DGV|1|1|C|2094
5DGV|1|1|G|2095
5DGV|1|1|A|2096

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M9

60S ribosomal protein L19-A