IL_5DGV_489

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUGGC*GAUUUCCAA

Length

14 nucleotides

Bulged bases

5DGV|1|6|G|651, 5DGV|1|6|U|681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGV|1|6|U|649
5DGV|1|6|U|650
5DGV|1|6|G|651
5DGV|1|6|G|652
5DGV|1|6|C|653
*
5DGV|1|6|G|677
5DGV|1|6|A|678
5DGV|1|6|U|679
5DGV|1|6|U|680
5DGV|1|6|U|681
5DGV|1|6|C|682
5DGV|1|6|C|683
5DGV|1|6|A|684
5DGV|1|6|A|685

Current chains

Chain 6

Saccharomyces cerevisiae S288c RDN37-1 miscRNA

Nearby chains

Chain d2

40S ribosomal protein S22-A

Chain s9

40S ribosomal protein S9-A