IL_5DGV_494
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AGCCAGCGA*UUGUGAAACU
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5DGV|1|6|A|1479
5DGV|1|6|G|1480
5DGV|1|6|C|1481
5DGV|1|6|C|1482
5DGV|1|6|A|1483
5DGV|1|6|G|1484
5DGV|1|6|C|1485
5DGV|1|6|G|1486
5DGV|1|6|A|1487
*
5DGV|1|6|U|1519
5DGV|1|6|U|1520
5DGV|1|6|G|1521
5DGV|1|6|U|1522
5DGV|1|6|G|1523
5DGV|1|6|A|1524
5DGV|1|6|A|1525
5DGV|1|6|A|1526
5DGV|1|6|C|1527
5DGV|1|6|U|1528
Current chains
- Chain 6
- Saccharomyces cerevisiae S288c RDN37-1 miscRNA
Nearby chains
- Chain c6
- 40S ribosomal protein S16-A
- Chain c9
- 40S ribosomal protein S19-A
- Chain d0
- 40S ribosomal protein S20
- Chain d5
- 40S ribosomal protein S25-A
- Chain d9
- 40S ribosomal protein S29-A
- Chain s3
- 40S ribosomal protein S3
- Chain s5
- 40S ribosomal protein S5
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