IL_5DGV_506

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGV_506 not in the Motif Atlas

Homologous match to IL_8CRE_465

Geometric discrepancy: 0.0996

The information below is about IL_8CRE_465

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5DGV|1|2|G|1540
5DGV|1|2|G|1541
5DGV|1|2|G|1542
5DGV|1|2|A|1543
5DGV|1|2|U|1544
5DGV|1|2|A|1545
*
5DGV|1|2|U|1566
5DGV|1|2|U|1567
5DGV|1|2|C|1568
5DGV|1|2|A|1569
5DGV|1|2|A|1570
5DGV|1|2|C|1571

Current chains

Chain 2

Saccharomyces cerevisiae S288c RDN37-1 miscRNA

Nearby chains

Chain C8

40S ribosomal protein S18-A

Chain C9

40S ribosomal protein S19-A