IL_5DM8_035
3D structure
- PDB id
- 5DM8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUUAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 5DM8|1|X|U|1026, 5DM8|1|X|A|1127, 5DM8|1|X|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DM8_035 not in the Motif Atlas
- Geometric match to IL_7A0S_037
- Geometric discrepancy: 0.0711
- The information below is about IL_7A0S_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
5DM8|1|X|G|1024
5DM8|1|X|G|1025
5DM8|1|X|U|1026
5DM8|1|X|U|1027
5DM8|1|X|A|1028
5DM8|1|X|A|1029
5DM8|1|X|G|1030
*
5DM8|1|X|C|1124
5DM8|1|X|G|1125
5DM8|1|X|A|1126
5DM8|1|X|A|1127
5DM8|1|X|A|1128
5DM8|1|X|A|1129
5DM8|1|X|U|1130
5DM8|1|X|G|1131
5DM8|1|X|A|1132
5DM8|1|X|U|1133
5DM8|1|X|C|1134
5DM8|1|X|G|1135
5DM8|1|X|G|1136
5DM8|1|X|G|1137
5DM8|1|X|G|1138
5DM8|1|X|C|1139
Current chains
- Chain X
- Deinococcus radiodurans R1 chromosome 1, complete sequence
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain G
- 50S ribosomal protein L13
- Chain J
- 50S ribosomal protein L16
- Chain Y
- 5S ribosomal RNA; 5S rRNA
Coloring options: