IL_5DM8_037

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCAUAGACAGC*GUCGAGUG

Length

20 nucleotides

Bulged bases

5DM8|1|X|U|1045, 5DM8|1|X|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DM8|1|X|C|1041
5DM8|1|X|G|1042
5DM8|1|X|C|1043
5DM8|1|X|A|1044
5DM8|1|X|U|1045
5DM8|1|X|A|1046
5DM8|1|X|G|1047
5DM8|1|X|A|1048
5DM8|1|X|C|1049
5DM8|1|X|A|1050
5DM8|1|X|G|1051
5DM8|1|X|C|1052
*
5DM8|1|X|G|1107
5DM8|1|X|U|1108
5DM8|1|X|C|1109
5DM8|1|X|G|1110
5DM8|1|X|A|1111
5DM8|1|X|G|1112
5DM8|1|X|U|1113
5DM8|1|X|G|1114

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains

Chain E

50S ribosomal protein L6

Chain J

50S ribosomal protein L16

Chain S

50S ribosomal protein L25