IL_5DM8_047

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAGG*CCGC

Length

10 nucleotides

Bulged bases

5DM8|1|X|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DM8|1|X|G|1319
5DM8|1|X|G|1320
5DM8|1|X|A|1321
5DM8|1|X|A|1322
5DM8|1|X|G|1323
5DM8|1|X|G|1324
*
5DM8|1|X|C|1330
5DM8|1|X|C|1331
5DM8|1|X|G|1332
5DM8|1|X|C|1333

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains

Chain P

50S ribosomal protein L22