IL_5DM8_048

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM8_048 not in the Motif Atlas

Geometric match to IL_7A0S_048

Geometric discrepancy: 0.0811

The information below is about IL_7A0S_048

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5DM8|1|X|C|1351
5DM8|1|X|U|1352
5DM8|1|X|A|1353
5DM8|1|X|A|1354
5DM8|1|X|G|1355
*
5DM8|1|X|C|1376
5DM8|1|X|G|1377
5DM8|1|X|A|1378
5DM8|1|X|U|1379
5DM8|1|X|G|1380

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains

Chain 2

50S ribosomal protein L34

Chain A

50S ribosomal protein L2