IL_5DM8_051

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAUG*CUAAA

Length

10 nucleotides

Bulged bases

5DM8|1|X|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM8_051 not in the Motif Atlas

Geometric match to IL_7A0S_051

Geometric discrepancy: 0.205

The information below is about IL_7A0S_051

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

25

Unit IDs

5DM8|1|X|U|1417
5DM8|1|X|G|1418
5DM8|1|X|A|1419
5DM8|1|X|U|1420
5DM8|1|X|G|1421
*
5DM8|1|X|C|1577
5DM8|1|X|U|1578
5DM8|1|X|A|1579
5DM8|1|X|A|1580
5DM8|1|X|A|1581

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains