IL_5DM8_052

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAC*GACG

Length

7 nucleotides

Bulged bases

5DM8|1|X|C|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM8_052 not in the Motif Atlas

Geometric match to IL_7RQB_056

Geometric discrepancy: 0.219

The information below is about IL_7RQB_056

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_54997.7

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

5DM8|1|X|U|1433
5DM8|1|X|A|1434
5DM8|1|X|C|1435
*
5DM8|1|X|G|1557
5DM8|1|X|A|1558
5DM8|1|X|C|1559
5DM8|1|X|G|1560

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains