IL_5DM8_063

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

5DM8|1|X|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM8_063 not in the Motif Atlas

Geometric match to IL_5TBW_078

Geometric discrepancy: 0.0843

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5DM8|1|X|C|1686
5DM8|1|X|G|1687
5DM8|1|X|U|1688
5DM8|1|X|A|1689
5DM8|1|X|A|1690
5DM8|1|X|C|1691
*
5DM8|1|X|G|1696
5DM8|1|X|A|1697
5DM8|1|X|A|1698
5DM8|1|X|G|1699
5DM8|1|X|A|1700
5DM8|1|X|A|1701
5DM8|1|X|G|1702

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains

Chain A

50S ribosomal protein L2