IL_5DM8_075

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

5DM8|1|X|U|2068

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM8_075 not in the Motif Atlas

Geometric match to IL_7A0S_075

Geometric discrepancy: 0.091

The information below is about IL_7A0S_075

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

5DM8|1|X|G|2067
5DM8|1|X|U|2068
5DM8|1|X|G|2069
*
5DM8|1|X|C|2442
5DM8|1|X|C|2443

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15