IL_5DM8_081

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAG*CAACGGUGAAAUACC

Length

20 nucleotides

Bulged bases

5DM8|1|X|A|2169, 5DM8|1|X|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DM8|1|X|G|2123
5DM8|1|X|G|2124
5DM8|1|X|G|2125
5DM8|1|X|A|2126
5DM8|1|X|G|2127
*
5DM8|1|X|C|2161
5DM8|1|X|A|2162
5DM8|1|X|A|2163
5DM8|1|X|C|2164
5DM8|1|X|G|2165
5DM8|1|X|G|2166
5DM8|1|X|U|2167
5DM8|1|X|G|2168
5DM8|1|X|A|2169
5DM8|1|X|A|2170
5DM8|1|X|A|2171
5DM8|1|X|U|2172
5DM8|1|X|A|2173
5DM8|1|X|C|2174
5DM8|1|X|C|2175

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains

Chain 0

50S ribosomal protein L1