IL_5DM8_097

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCGCU*AUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM8_097 not in the Motif Atlas

Geometric match to IL_7A0S_095

Geometric discrepancy: 0.0901

The information below is about IL_7A0S_095

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.13

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

23

Unit IDs

5DM8|1|X|C|2680
5DM8|1|X|C|2681
5DM8|1|X|G|2682
5DM8|1|X|C|2683
5DM8|1|X|U|2684
*
5DM8|1|X|A|2725
5DM8|1|X|U|2726
5DM8|1|X|G|2727

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14

Chain M

50S ribosomal protein L19