IL_5DM8_103

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGCACG*UUCAG

Length

11 nucleotides

Bulged bases

5DM8|1|X|C|2867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM8_103 not in the Motif Atlas

Geometric match to IL_7A0S_101

Geometric discrepancy: 0.0671

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

5DM8|1|X|U|2847
5DM8|1|X|G|2848
5DM8|1|X|C|2849
5DM8|1|X|A|2850
5DM8|1|X|C|2851
5DM8|1|X|G|2852
*
5DM8|1|X|U|2865
5DM8|1|X|U|2866
5DM8|1|X|C|2867
5DM8|1|X|A|2868
5DM8|1|X|G|2869

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains

Chain K

50S ribosomal protein L17

Chain M

50S ribosomal protein L19