IL_5DM8_104
3D structure
- PDB id
- 5DM8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAC*GCAG
- Length
- 7 nucleotides
- Bulged bases
- 5DM8|1|Y|A|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DM8_104 not in the Motif Atlas
- Geometric match to IL_5ML7_010
- Geometric discrepancy: 0.2101
- The information below is about IL_5ML7_010
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_68118.5
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
5DM8|1|Y|C|19
5DM8|1|Y|A|20
5DM8|1|Y|C|21
*
5DM8|1|Y|G|66
5DM8|1|Y|C|67
5DM8|1|Y|A|68
5DM8|1|Y|G|69
Current chains
- Chain Y
- Deinococcus radiodurans R1 chromosome 1, complete sequence
Nearby chains
- Chain D
- 50S ribosomal protein L5
- Chain L
- 50S ribosomal protein L18
- Chain S
- 50S ribosomal protein L25
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: