IL_5DM8_107
3D structure
- PDB id
- 5DM8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CACCCC*GAACUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DM8_107 not in the Motif Atlas
- Geometric match to IL_7A0S_105
- Geometric discrepancy: 0.1874
- The information below is about IL_7A0S_105
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93630.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
5DM8|1|Y|C|35
5DM8|1|Y|A|36
5DM8|1|Y|C|37
5DM8|1|Y|C|38
5DM8|1|Y|C|39
5DM8|1|Y|C|40
*
5DM8|1|Y|G|46
5DM8|1|Y|A|47
5DM8|1|Y|A|48
5DM8|1|Y|C|49
5DM8|1|Y|U|50
5DM8|1|Y|G|51
Current chains
- Chain Y
- Deinococcus radiodurans R1 chromosome 1, complete sequence
Nearby chains
- Chain D
- 50S ribosomal protein L5
- Chain L
- 50S ribosomal protein L18
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: