3D structure

PDB id
5DOX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CCCCCAAG*CG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5DOX_036 not in the Motif Atlas
Homologous match to IL_7RQB_037
Geometric discrepancy: 0.0511
The information below is about IL_7RQB_037
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_15861.7
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
12

Unit IDs

5DOX|1|1A|C|1004
5DOX|1|1A|C|1005
5DOX|1|1A|C|1006
5DOX|1|1A|C|1007
5DOX|1|1A|C|1008
5DOX|1|1A|A|1009
5DOX|1|1A|A|1010
5DOX|1|1A|G|1011
*
5DOX|1|1A|C|1150
5DOX|1|1A|G|1151

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1N
50S ribosomal protein L13
Chain 1U
50S ribosomal protein L20

Coloring options:


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