IL_5DOX_107

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

5DOX|1|1A|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DOX_107 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0475

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5DOX|1|1A|G|2737
5DOX|1|1A|A|2738
5DOX|1|1A|U|2739
5DOX|1|1A|A|2740
5DOX|1|1A|A|2741
5DOX|1|1A|C|2742
*
5DOX|1|1A|G|2762
5DOX|1|1A|G|2763
5DOX|1|1A|A|2764
5DOX|1|1A|A|2765
5DOX|1|1A|G|2766
5DOX|1|1A|C|2767

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6

Chain 1N

50S ribosomal protein L13