IL_5DOX_157
3D structure
- PDB id
- 5DOX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCC*GGC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: GCC,GGC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DOX_157 not in the Motif Atlas
- Geometric match to IL_1Y27_001
- Geometric discrepancy: 0.1996
- The information below is about IL_1Y27_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
5DOX|1|1a|G|988
5DOX|1|1a|C|989
5DOX|1|1a|C|990
*
5DOX|1|1a|G|1215
5DOX|1|1a|G|1216
5DOX|1|1a|C|1217
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1n
- 30S ribosomal protein S14 type Z
- Chain 1s
- 30S ribosomal protein S19
Coloring options: